Publications

@article{Lee2016,

title = {Net primary productivity estimates and environmental variables in the  Arctic Ocean: An assessment of coupled physical-biogeochemical models},

author = {Younjoo J Lee and Patricia A Matrai and Marjorie A M Friedrichs and Vincent S Saba and Olivier Aumont and Marcel Babin and Erik T Buitenhuis and Matthieu Chevallier and Lee de Mora and Morgane Dessert and John P Dunne and Ingrid H Ellingsen and Doron Feldman and Robert Frouin and Marion Gehlen and Thomas Gorgues and Tatiana Ilyina and Meibing Jin and Jasmin G John and Jon Lawrence and Manfredi Manizza and Christophe E Menkes and Coralie Perruche and Vincent Le Fouest and Ekaterina E Popova and Anastasia Romanou and Annette Samuelsen and Jorg Schwinger and Roland Seferian and Charles A Stock and Jerry Tjiputra and Bruno Tremblay and Kyozo Ueyoshi and Marcello Vichi and Andrew Yool and Jinlun Zhang},

url = {https://agupubs.onlinelibrary.wiley.com/doi/full/10.1002/2016JC011993},

doi = {10.1002/2016JC011993},

year  = {2016},

date = {2016-01-01},

urldate = {2016-01-01},

journal = {Journal of Geophysical Research-Oceans},

volume = {121},

number = {12},

pages = {8635--8669},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Auger2016,

title = {What drives the spatial variability of primary productivity and matter  fluxes in the north-west African upwelling system? A modelling approach},

author = {Pierre-Amael Auger and Thomas Gorgues and Eric Machu and Olivier Aumont and Patrice Brehmer},

doi = {10.5194/bg-13-6419-2016},

issn = {1726-4170},

year  = {2016},

date = {2016-01-01},

urldate = {2016-01-01},

journal = {Biogeosciences},

volume = {13},

number = {23},

pages = {6419--6440},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Iudicone2016,

title = {The formation of the ocean's anthropogenic carbon reservoir},

author = {Daniele Iudicone and Keith B Rodgers and Yves Plancherel and Olivier Aumont and Takamitsu Ito and Robert M Key and Gurvan Madec and Masao Ishii},

doi = {10.1038/srep35473},

issn = {2045-2322},

year  = {2016},

date = {2016-01-01},

urldate = {2016-01-01},

journal = {Scientific Reports},

volume = {6},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jose2016b,

title = {Suppressing and enhancing effects of mesoscale dynamics on biological  production in the Mozambique Channel},

author = {Y S Jose and P Penven and O Aumont and E Machu and C L Moloney and F Shillington and O Maury},

doi = {10.1016/j.jmarsys.2016.02.003},

issn = {0924-7963},

year  = {2016},

date = {2016-01-01},

urldate = {2016-01-01},

journal = {Journal of Marine Systems},

volume = {158},

pages = {129--139},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Menkes2016,

title = {Global impact of tropical cyclones on primary production},

author = {Christophe E Menkes and Matthieu Lengaigne and Marina Levy and Christian Ethe and Laurent Bopp and Olivier Aumont and Emmanuel Vincent and Jerome Vialard and Swen Jullien},

doi = {10.1002/2015GB005214},

issn = {0886-6236},

year  = {2016},

date = {2016-01-01},

urldate = {2016-01-01},

journal = {Global Biogeochemical Cycles},

volume = {30},

number = {5},

pages = {767--786},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tagliabue2016,

title = {How well do global ocean biogeochemistry models simulate dissolved iron  distributions?},

author = {Alessandro Tagliabue and Olivier Aumont and Ros DeAth and John P Dunne and Stephanie Dutkiewicz and Eric Galbraith and Kazuhiro Misumi and Keith J Moore and Andy Ridgwell and Elliot Sherman and Charles Stock and Marcello Vichi and Christoph Voelker and Andrew Yool},

doi = {10.1002/2015GB005289},

issn = {0886-6236},

year  = {2016},

date = {2016-01-01},

urldate = {2016-01-01},

journal = {Global Biogeochemical Cycles},

volume = {30},

number = {2},

pages = {149--174},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Laufkotter2016,

title = {Projected decreases in future marine export production: the role of the  carbon flux through the upper ocean ecosystem},

author = {Charlotte Laufk\"{o}tter and Meike Vogt and Nicolas Gruber and Olivier Aumont and Laurent Bopp and Scott C Doney and John P Dunne and Judith Hauck and Jasmin G John and Ivan D Lima and Roland Seferian and Christoph Volker},

doi = {10.5194/bg-13-4023-2016},

issn = {1726-4170},

year  = {2016},

date = {2016-01-01},

urldate = {2016-01-01},

journal = {Biogeosciences},

volume = {13},

number = {13},

pages = {4023--4047},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Seferian2016a,

title = {Development and Evaluation of CNRM Earth System Model \textendash CNRM-ESM1},

author = {Roland S\'{e}f\'{e}rian and Christine Delire and Bertrand Decharme and Aurore Voldoire and David Salas y Melia and Matthieu Chevallier and David Saint-Martin and Olivier Aumont and Jean-Christophe Calvet and Dominique Carrer and Herv\'{e} Douville and Laurent Franchist\'{e}guy and Emilie Joetzjer and S\'{e}phane S\'{e}n\'{e}si},

doi = {10.5194/gmd-9-1423-2016},

year  = {2016},

date = {2016-01-01},

urldate = {2016-01-01},

journal = {Geoscientific Model Development},

volume = {9},

number = {4},

pages = {1423--1453},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{aumont_pisces-v2:_2015,

title = {PISCES-v2: an ocean biogeochemical model for carbon and ecosystem studies},

author = {O Aumont and C Eth\'{e} and A Tagliabue and L Bopp and M Gehlen},

url = {http://www.geosci-model-dev.net/8/2465/2015/},

doi = {10.5194/gmd-8-2465-2015},

issn = {1991-9603},

year  = {2015},

date = {2015-08-01},

urldate = {2016-12-01},

journal = {Geoscientific Model Development},

volume = {8},

number = {8},

pages = {2465--2513},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Arrizabalaga2015,

title = {Global habitat preferences of commercially valuable tuna},

author = {Haritz Arrizabalaga and Florence Dufour and Laurence Kell and Gorka Merino and Leire Ibaibarriaga and Guillem Chust and Xabier Irigoien and Josu Santiago and Hilario Murua and Igaratza Fraile and Marina Chifflet and Nerea Goikoetxea and Yolanda Sagarminaga and Olivier Aumont and Laurent Bopp and Miguel Herrera and Jean Marc Fromentin and Sylvain Bonhomeau},

url = {http://www.sciencedirect.com/science/article/pii/S0967064514001738},

doi = {10.1016/j.dsr2.2014.07.001},

issn = {0967-0645},

year  = {2015},

date = {2015-03-01},

urldate = {2015-03-01},

journal = {Deep Sea Research Part II: Topical Studies in Oceanography},

volume = {113},

pages = {102--112},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{bopp_pathways_2015,

title = {Pathways of anthropogenic carbon subduction in the global ocean},

author = {L Bopp and M L\'{e}vy and L Resplandy and J B Sall\'{e}e},

url = {http://doi.wiley.com/10.1002/2015GL065073},

doi = {10.1002/2015GL065073},

issn = {00948276},

year  = {2015},

date = {2015-01-01},

urldate = {2016-07-10},

journal = {Geophysical Research Letters},

volume = {42},

number = {15},

pages = {6416--6423},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{auger_comparative_2015,

title = {Comparative study of potential transfer of natural and anthropogenic cadmium to plankton communities in the North-West African upwelling},

author = {P A Auger and E Machu and T Gorgues and N Grima and M Waeles},

url = {http://linkinghub.elsevier.com/retrieve/pii/S0048969714014831},

doi = {10.1016/j.scitotenv.2014.10.045},

issn = {00489697},

year  = {2015},

date = {2015-01-01},

urldate = {2014-11-08},

journal = {Science of The Total Environment},

volume = {505},

pages = {870--888},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Lefort2015,

title = {Spatial and body-size dependent response of marine pelagic communities to projected global climate change},

author = {Stelly Lefort and Olivier Aumont and Laurent Bopp and Thomas Arsouze and Marion Gehlen and Olivier Maury},

url = {http://onlinelibrary.wiley.com/doi/10.1111/gcb.12679/abstract},

doi = {10.1111/gcb.12679},

issn = {1365-2486},

year  = {2015},

date = {2015-01-01},

urldate = {2015-01-01},

journal = {Global Change Biology},

volume = {21},

number = {1},

pages = {154--164},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Aumont2015,

title = {PISCES-v2: an ocean biogeochemical model for carbon and ecosystem studies},

author = {Olivier Aumont and Christian Eth\'{e} and Alessandro Tagliabue and Laurent Bopp and Marion Gehlen},

doi = {10.5194/gmd-8-2465-2015},

year  = {2015},

date = {2015-01-01},

urldate = {2015-01-01},

journal = {Geoscientific Model Development},

volume = {8},

pages = {2465--2513},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wang2015,

title = {Influence of anthropogenic aerosol deposition on the relationship between oceanic productivity and warming},

author = {Rong Wang and Yves Balkanski and Laurent Bopp and Olivier Aumont and Olivier Boucher and Philippe Ciais and Marion Gehlen and Josep Pe\~{n}uelas and Christian Eth\'{e} and Didier Hauglustaine and Bengang Li and Junfeng Liu and Feng Zhou and Shu Tao},

doi = {10.1002/2015GL066753},

issn = {1944-8007},

year  = {2015},

date = {2015-01-01},

urldate = {2015-01-01},

journal = {Geophysical Research Letters},

volume = {42},

number = {24},

pages = {2015GL066753},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hauck2015,

title = {On the Southern Ocean CO2 uptake and the role of the biological carbon pump in the 21st century},

author = {J Hauck and C V\"{o}lker and D A Wolf-Gladrow and C Laufk\"{o}tter and M Vogt and O Aumont and L Bopp and E T Buitenhuis and S C Doney and J Dunne and N Gruber and T Hashioka and J John and Le C Qu\'{e}r\'{e} and I D Lima and H Nakano and R S\'{e}f\'{e}rian and I Totterdell},

doi = {10.1002/2015GB005140},

issn = {1944-9224},

year  = {2015},

date = {2015-01-01},

urldate = {2015-01-01},

journal = {Global Biogeochemical Cycles},

volume = {29},

number = {9},

pages = {2015GB005140},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Laufkotter2015,

title = {Drivers and uncertainties of future global marine primary production in marine ecosystem models},

author = {C Laufk\"{o}tter and M Vogt and N Gruber and M Aita-Noguchi and O Aumont and L Bopp and E Buitenhuis and S C Doney and J Dunne and T Hashioka and J Hauck and T Hirata and J John and C Le Qu\'{e}r\'{e} and I D Lima and H Nakano and R Seferian and I Totterdell and M Vichi and C V\"{o}lker},

doi = {10.5194/bg-12-6955-2015},

issn = {1726-4189},

year  = {2015},

date = {2015-01-01},

urldate = {2015-01-01},

journal = {Biogeosciences},

volume = {12},

number = {23},

pages = {6955--6984},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Guieu2014,

title = {The significance of the episodic nature of atmospheric deposition to Low Nutrient Low Chlorophyll regions},

author = {C Guieu and O Aumont and A Paytan and L Bopp and C S Law and N Mahowald and E P Achterberg and E Mara\~{n}\'{o}n and B Salihoglu and A Crise and T Wagener and B Herut and K Desboeufs and M Kanakidou and N Olgun and F Peters and E Pulido-Villena and A Tovar-Sanchez and C V\"{o}lker},

url = {http://onlinelibrary.wiley.com/doi/10.1002/2014GB004852/abstract},

doi = {10.1002/2014GB004852},

issn = {1944-9224},

year  = {2014},

date = {2014-11-01},

urldate = {2014-11-01},

journal = {Global Biogeochemical Cycles},

volume = {28},

number = {11},

pages = {2014GB004852},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{seferian_detecting_2014,

title = {Detecting the anthropogenic influences on recent changes in ocean carbon uptake},

author = {Roland S\'{e}f\'{e}rian and Aur\'{e}lien Ribes and Laurent Bopp},

url = {http://doi.wiley.com/10.1002/2014GL061223},

doi = {10.1002/2014GL061223},

issn = {00948276},

year  = {2014},

date = {2014-08-01},

urldate = {2017-01-14},

journal = {Geophysical Research Letters},

volume = {41},

number = {16},

pages = {5968--5977},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Rodgers2014,

title = {Strong sensitivity of Southern Ocean carbon uptake and nutrient cycling to wind stirring},

author = {K B Rodgers and O Aumont and S E Mikaloff Fletcher and Y Plancherel and L Bopp and C de Boyer Mont\'{e}gut and D Iudicone and R F Keeling and G Madec and R Wanninkhof},

url = {http://www.biogeosciences.net/11/4077/2014/},

doi = {10.5194/bg-11-4077-2014},

issn = {1726-4189},

year  = {2014},

date = {2014-08-01},

urldate = {2014-08-01},

journal = {Biogeosciences},

volume = {11},

number = {15},

pages = {4077--4098},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{borrione_sedimentary_2014,

title = {Sedimentary and atmospheric sources of iron around South Georgia, Southern Ocean: a modelling perspective},

author = {I Borrione and O Aumont and M C Nielsd\'{o}ttir and R Schlitzer},

url = {http://www.biogeosciences.net/11/1981/2014/},

doi = {10.5194/bg-11-1981-2014},

issn = {1726-4189},

year  = {2014},

date = {2014-01-01},

urldate = {2016-07-11},

journal = {Biogeosciences},

volume = {11},

number = {7},

pages = {1981--2001},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{rodgers_strong_2014,

title = {Strong sensitivity of Southern Ocean carbon uptake and nutrient cycling to wind stirring},

author = {Keith B Rodgers and Olivier Aumont and SE Mikaloff Fletcher and Y Plancherel and Laurent Bopp and Cl\'{e}ment De Boyer Mont\'{e}gut and Daniele Iudicone and R F Keeling and Gurvan Madec and R Wanninkhof},

url = {https://hal.archives-ouvertes.fr/hal-01128483/document},

year  = {2014},

date = {2014-01-01},

urldate = {2016-10-06},

journal = {Biogeosciences},

volume = {11},

number = {15},

pages = {4077--4098},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Echevin2014,

title = {Intraseasonal variability of nearshore productivity in the Northern Humboldt Current System: The role of coastal trapped waves},

author = {Vincent Echevin and Aur\'{e}lie Albert and Marina L\'{e}vy and Michelle Graco and Olivier Aumont and Alice Pi\'{e}tri and Gilles Garric},

url = {http://www.sciencedirect.com/science/article/pii/S0278434313003804},

year  = {2014},

date = {2014-01-01},

urldate = {2014-01-01},

journal = {Continental Shelf Research},

volume = {73},

pages = {14--30},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ishii2014,

title = {Air-sea CO2 flux in the Pacific Ocean for the period 1990-2009},

author = {M Ishii and R A Feely and K B Rodgers and G -H Park and R Wanninkhof and D Sasano and H Sugimoto and C E Cosca and S Nakaoka and M Telszewski and Y Nojiri and S E Mikaloff Fletcher and Y Niwa and P K Patra and V Valsala and H Nakano and I Lima and S C Doney and E T Buitenhuis and O Aumont and J P Dunne and A Lenton and T Takahashi},

url = {http://www.biogeosciences.net/11/709/2014/},

doi = {10.5194/bg-11-709-2014},

issn = {1726-4189},

year  = {2014},

date = {2014-01-01},

urldate = {2014-01-01},

journal = {Biogeosciences},

volume = {11},

number = {3},

pages = {709--734},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tagliabue2014,

title = {The impact of different external sources of iron on the global carbon cycle},

author = {Alessandro Tagliabue and Olivier Aumont and Laurent Bopp},

url = {http://onlinelibrary.wiley.com/doi/10.1002/2013GL059059/abstract},

doi = {10.1002/2013GL059059},

issn = {1944-8007},

year  = {2014},

date = {2014-01-01},

urldate = {2014-01-01},

journal = {Geophysical Research Letters},

volume = {41},

number = {3},

pages = {2013GL059059},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jose2014,

title = {Influence of mesoscale eddies on biological production in the Mozambique Channel: Several contrasted examples from a coupled ocean-biogeochemistry model},

author = {Y S Jos\'{e} and O Aumont and E Machu and P Penven and C L Moloney and O Maury},

url = {http://www.sciencedirect.com/science/article/pii/S0967064513004128},

doi = {10.1016/j.dsr2.2013.10.018},

issn = {0967-0645},

year  = {2014},

date = {2014-01-01},

urldate = {2014-01-01},

journal = {Deep Sea Research Part II: Topical Studies in Oceanography},

volume = {100},

pages = {79--93},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Borrione2014,

title = {Sedimentary and atmospheric sources of iron around South Georgia, Southern Ocean: a modelling perspective},

author = {I Borrione and O Aumont and M C Nielsd\'{o}ttir and R Schlitzer},

url = {http://www.biogeosciences.net/11/1981/2014/},

doi = {10.5194/bg-11-1981-2014},

issn = {1726-4189},

year  = {2014},

date = {2014-01-01},

urldate = {2014-01-01},

journal = {Biogeosciences},

volume = {11},

number = {7},

pages = {1981--2001},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ayata2014,

title = {Phytoplankton plasticity drives large variability in carbon fixation efficiency},

author = {Sakina-Doroth\'{e}e Ayata and Marina L\'{e}vy and Olivier Aumont and Laure Resplandy and Alessandro Tagliabue and Antoine Sciandra and Olivier Bernard},

doi = {10.1002/2014GL062249},

year  = {2014},

date = {2014-01-01},

urldate = {2014-01-01},

journal = {Geophysical Research Letters},

volume = {41},

number = {24},

pages = {8994--9000},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ayata2013,

title = {Phytoplankton growth formulation in marine ecosystem models: Should we take into account photo-acclimation and variable stoichiometry in oligotrophic areas?},

author = {S -D Ayata and M L\'{e}vy and O Aumont and A Sciandra and J Sainte-Marie and A Tagliabue and O Bernard},

url = {http://www.sciencedirect.com/science/article/pii/S092479631300002X},

doi = {10.1016/j.jmarsys.2012.12.010},

issn = {0924-7963},

year  = {2013},

date = {2013-09-01},

urldate = {2013-09-01},

journal = {Journal of Marine Systems},

volume = {125},

pages = {29--40},

abstract = {The aim of this study is to evaluate the consequences of accounting for variable Chl:C (chlorophyll:carbon) and C:N (carbon:nitrogen) ratios in the formulation of phytoplankton growth in biogeochemical models. We compare the qualitative behavior of a suite of phytoplankton growth formulations with increasing complexity: 1) a Redfield formulation (constant C:N ratio) without photo-acclimation (constant Chl:C ratio), 2) a Redfield formulation with diagnostic chlorophyll (variable and empirical Chl:C ratio), 3) a quota formulation (variable C:N ratio) with diagnostic chlorophyll, and 4) a quota formulation with prognostic chlorophyll (dynamic variable). These phytoplankton growth formulations are embedded in a simple marine ecosystem model in a 1D framework at the Bermuda Atlantic Time-series (BATS) station. The model parameters are tuned using a stochastic assimilation method (micro-genetic algorithm) and skill assessment techniques are used to compare results. The lowest misfits with observations are obtained when photo-acclimation is taken into account (variable Chl:C ratio) and with non-Redfield stoichiometry (variable C:N ratio), both under spring and summer conditions. This indicates that the most flexible models (i.e., with variable ratios) are necessary to reproduce observations. As seen previously, photo-acclimation is essential in reproducing the observed deep chlorophyll maximum and subsurface production present during summer. Although Redfield and quota formulations of C:N ratios can equally reproduce chlorophyll data the higher primary production that arises from the quota model is in better agreement with observations. Under the oligotrophic conditions that typify the BATS site no clear difference was detected between quota formulations with diagnostic or prognostic chlorophyll.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{alvain_rapid_2013,

title = {Rapid climatic driven shifts of diatoms at high latitudes},

author = {S\'{e}verine Alvain and Corinne Le Qu\'{e}r\'{e} and Laurent Bopp and Marie-Fanny Racault and Gr\'{e}gory Beaugrand and David Dessailly and Eric T Buitenhuis},

url = {http://linkinghub.elsevier.com/retrieve/pii/S0034425713000266},

doi = {10.1016/j.rse.2013.01.014},

issn = {00344257},

year  = {2013},

date = {2013-05-01},

urldate = {2013-05-01},

journal = {Remote Sensing of Environment},

volume = {132},

pages = {195--201},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Seferian2013,

title = {Skill assessment of three earth system models with common marine biogeochemistry},

author = {Roland S\'{e}f\'{e}rian and Laurent Bopp and Marion Gehlen and James C Orr and Christian Eth\'{e} and Patricia Cadule and Olivier Aumont and David Salas y M\'{e}lia and Aurore Voldoire and Gurvan Madec},

url = {http://link.springer.com/article/10.1007/s00382-012-1362-8},

doi = {10.1007/s00382-012-1362-8},

issn = {0930-7575, 1432-0894},

year  = {2013},

date = {2013-05-01},

urldate = {2013-05-01},

journal = {Climate Dynamics},

volume = {40},

number = {9-10},

pages = {2549--2573},

abstract = {We have assessed the ability of a common ocean biogeochemical model, PISCES, to match relevant modern data fields across a range of ocean circulation fields from three distinct Earth system models: IPSL-CM4-LOOP, IPSL-CM5A-LR and CNRM-CM5.1. The first of these Earth system models has contributed to the IPCC 4th assessment report, while the latter two are contributing to the ongoing IPCC 5th assessment report. These models differ with respect to their atmospheric component, ocean subgrid-scale physics and resolution. The simulated vertical distribution of biogeochemical tracers suffer from biases in ocean circulation and a poor representation of the sinking fluxes of matter. Nevertheless, differences between upper and deep ocean model skills significantly point to changes in the underlying model representations of ocean circulation. IPSL-CM5A-LR and CNRM-CM5.1 poorly represent deep-ocean circulation compared to IPSL-CM4-LOOP degrading the vertical distribution of biogeochemical tracers. However, their representations of surface wind, wind stress, mixed-layer depth and geostrophic circulations (e.g., Antarctic Circumpolar Current) have been improved compared to IPSL-CM4-LOOP. These improvements result in a better representation of large-scale structure of biogeochemical fields in the upper ocean. In particular, a deepening of 20\textendash40 m of the summer mixed-layer depth allows to capture the 0\textendash0.5 ensuremathmugChl L-1 concentrations class of surface chlorophyll in the Southern Ocean. Further improvements in the representation of the ocean mixed-layer and deep-ocean ventilation are needed for the next generations of models development to better simulate marine biogeochemistry. In order to better constrain ocean dynamics, we suggest that biogeochemical or passive tracer modules should be used routinely for both model development and model intercomparisons.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{levy_physical_2013,

title = {Physical pathways for carbon transfers between the surface mixed layer and the ocean interior},

author = {M Levy and L Bopp and P Karleskind and L Resplandy and C Ethe and F Pinsard},

url = {http://doi.wiley.com/10.1002/gbc.20092},

doi = {10.1002/gbc.20092},

issn = {08866236},

year  = {2013},

date = {2013-01-01},

urldate = {2014-10-02},

journal = {Global Biogeochemical Cycles},

volume = {27},

number = {4},

pages = {1001--1012},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{anav_evaluating_2013,

title = {Evaluating the Land and Ocean Components of the Global Carbon Cycle in the CMIP5 Earth System Models},

author = {A Anav and P Friedlingstein and M Kidston and L Bopp and P Ciais and P Cox and C Jones and M Jung and R Myneni and Z Zhu},

url = {http://journals.ametsoc.org/doi/abs/10.1175/JCLI-D-12-00417.1},

doi = {10.1175/JCLI-D-12-00417.1},

issn = {0894-8755, 1520-0442},

year  = {2013},

date = {2013-01-01},

urldate = {2016-08-31},

journal = {Journal of Climate},

volume = {26},

number = {18},

pages = {6801--6843},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Dufresne2013,

title = {Climate change projections using the IPSL-CM5 Earth System Model: from CMIP3 to CMIP5},

author = {J -L Dufresne and M -A Foujols and S Denvil and A Caubel and O Marti and O Aumont and Y Balkanski and S Bekki and H Bellenger and R Benshila and S Bony and L Bopp and P Braconnot and P Brockmann and P Cadule and F Cheruy and F Codron and A Cozic and D Cugnet and N de Noblet and J -P Duvel and C Eth\'{e} and L Fairhead and T Fichefet and S Flavoni and P Friedlingstein and J -Y Grandpeix and L Guez and E Guilyardi and D Hauglustaine and F Hourdin and A Idelkadi and J Ghattas and S Joussaume and M Kageyama and G Krinner and S Labetoulle and A Lahellec and M -P Lefebvre and F Lefevre and C Levy and Z X Li and J Lloyd and F Lott and G Madec and M Mancip and M Marchand and S Masson and Y Meurdesoif and J Mignot and I Musat and S Parouty and J Polcher and C Rio and M Schulz and D Swingedouw and S Szopa and C Talandier and P Terray and N Viovy and N Vuichard},

url = {http://link.springer.com/article/10.1007/s00382-012-1636-1},

doi = {10.1007/s00382-012-1636-1},

issn = {0930-7575, 1432-0894},

year  = {2013},

date = {2013-01-01},

urldate = {2013-01-01},

journal = {Climate Dynamics},

volume = {40},

number = {9-10},

pages = {2123--2165},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Currie2013,

title = {Indian Ocean dipole and El Ni\~{n}o/Southern Oscillation impacts on regional chlorophyll anomalies in the Indian Ocean},

author = {J C Currie and Mathieu Lengaigne and J\'{e}r\^{o}me Vialard and D M Kaplan and Olivier Aumont and S W A Naqvi and Olivier Maury},

url = {https://doi.org/10.5194/bg-10-6677-2013},

doi = {10.5194/bg-10-6677-2013},

year  = {2013},

date = {2013-01-01},

urldate = {2013-01-01},

journal = {Biogeosciences},

volume = {10},

pages = {6677--6698},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{seferian_water_2012,

title = {Water Mass Analysis of Effect of Climate Change on Air\textendashSea CO2 Fluxes: The Southern Ocean},

author = {Roland S\'{e}f\'{e}rian and Daniele Iudicone and Laurent Bopp and Tilla Roy and Gurvan Madec},

url = {http://journals.ametsoc.org/doi/abs/10.1175/JCLI-D-11-00291.1},

doi = {10.1175/JCLI-D-11-00291.1},

issn = {0894-8755, 1520-0442},

year  = {2012},

date = {2012-01-01},

urldate = {2016-07-24},

journal = {Journal of Climate},

volume = {25},

number = {11},

pages = {3894--3908},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Duteil2012,

title = {Preformed and regenerated phosphate in ocean general circulation models: can right total concentrations be wrong?},

author = {O Duteil and W Koeve and A Oschlies and O Aumont and D Bianchi and L Bopp and E Galbraith and R Matear and J K Moore and J L Sarmiento and J Segschneider},

url = {http://www.biogeosciences.net/9/1797/2012/},

doi = {10.5194/bg-9-1797-2012},

issn = {1726-4189},

year  = {2012},

date = {2012-01-01},

urldate = {2012-01-01},

journal = {Biogeosciences},

volume = {9},

number = {5},

pages = {1797--1807},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{iudicone_water_2011,

title = {Water masses as a unifying framework for understanding the Southern Ocean Carbon Cycle},

author = {D Iudicone and K B Rodgers and I Stendardo and O Aumont and G Madec and L Bopp and O Mangoni and M Ribera d\'{A}lcala'},

url = {http://www.biogeosciences.net/8/1031/2011/},

doi = {10.5194/bg-8-1031-2011},

issn = {1726-4189},

year  = {2011},

date = {2011-01-01},

urldate = {2016-09-01},

journal = {Biogeosciences},

volume = {8},

number = {5},

pages = {1031--1052},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{roy_regional_2011,

title = {Regional Impacts of Climate Change and Atmospheric CO2 on Future Ocean Carbon Uptake: A Multimodel Linear Feedback Analysis},

author = {Tilla Roy and Laurent Bopp and Marion Gehlen and Birgit Schneider and Patricia Cadule and Thomas L Fr\"{o}licher and Joachim Segschneider and Jerry Tjiputra and Christoph Heinze and Fortunat Joos},

url = {http://journals.ametsoc.org/doi/abs/10.1175/2010JCLI3787.1},

doi = {10.1175/2010JCLI3787.1},

issn = {0894-8755, 1520-0442},

year  = {2011},

date = {2011-01-01},

urldate = {2014-10-02},

journal = {Journal of Climate},

volume = {24},

number = {9},

pages = {2300--2318},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kane2011,

title = {Improving the parameters of a global ocean biogeochemical model via variational assimilation of in situ data at five time series stations},

author = {A Kane and C Moulin and S Thiria and L Bopp and M Berrada and A Tagliabue and M Cr\'{e}pon and O Aumont and F Badran},

url = {http://onlinelibrary.wiley.com/doi/10.1029/2009JC006005/abstract},

doi = {10.1029/2009JC006005},

issn = {2156-2202},

year  = {2011},

date = {2011-01-01},

urldate = {2011-01-01},

journal = {Journal of Geophysical Research: Oceans},

volume = {116},

number = {C6},

pages = {C06011},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{tagliabue_hydrothermal_2010,

title = {Hydrothermal contribution to the oceanic dissolved iron inventory},

author = {Alessandro Tagliabue and Laurent Bopp and Jean-Claude Dutay and Andrew R Bowie and Fanny Chever and Philippe Jean-Baptiste and Eva Bucciarelli and Delphine Lannuzel and Tomas Remenyi and G\'{e}raldine Sarthou and Olivier Aumont and Marion Gehlen and Catherine Jeandel},

url = {http://www.nature.com/doifinder/10.1038/ngeo818},

doi = {10.1038/ngeo818},

issn = {1752-0894, 1752-0908},

year  = {2010},

date = {2010-04-01},

urldate = {2017-10-16},

journal = {Nature Geoscience},

volume = {3},

number = {4},

pages = {252--256},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{gorgues_revisiting_2010,

title = {Revisiting the La Ni\~{n}a 1998 phytoplankton blooms in the equatorial Pacific},

author = {Thomas Gorgues and C Menkes and L Slemons and O Aumont and Y Dandonneau and M -H Radenac and S Alvain and C Moulin},

url = {http://www.sciencedirect.com/science/article/pii/S0967063710000075},

doi = {10.1016/j.dsr.2009.12.008},

issn = {0967-0637},

year  = {2010},

date = {2010-01-01},

urldate = {2012-10-09},

journal = {Deep Sea Research Part I: Oceanographic Research Papers},

volume = {57},

number = {4},

pages = {567--576},

abstract = {A biogeochemical model of the tropical Pacific has been used to assess the impact of interannual variability in a western Pacific iron source on the iron-limited ecosystem of the central and eastern Pacific during the 1997\textendash1998 El Ni\~{n}o. A reference simulation and two simulations with an iron source in the western Pacific have been performed. The two “source” simulations differed only in the temporal variability of the iron source. In the variable source simulation, the iron concentration in the source region was proportional to the velocity of the New Guinea Coastal Undercurrent (NGCUC). In the constant source simulation, the same time-averaged concentration of iron was imposed with no temporal variability. The variable source was designed to mimic variations of iron flux from the northeast slope of New Guinea to the NGCUC due to modulation of sedimentary iron resuspension as previously hypothesized. Through the comparison of these simulations, it appeared that: (i) an iron source in the NGCUC, regardless of its source variability, increases biomass in the eastern equatorial Pacific because of the greater eastward iron flux by the Equatorial Undercurrent and (ii) a variable NGCUC iron source does not change the temporal variability of eastern Pacific chlorophyll, and in particular the timing and intensity of the June 1998 bloom. To explain eastern Pacific biological variability, local rather than remote processes are needed, such as wind-driven upwelling, the local depth of the thermocline, tropical instability waves and biological processes such as high grazing pressure. Therefore, while the western Pacific sources of dissolved iron are important in our model to sustain annually integrated equatorial Pacific production, they are unlikely to strongly constrain the timing of blooms in the central and eastern Pacific such as during the 1998 La Ni\~{n}a.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gorgues2010a,

title = {A mechanistic account of increasing seasonal variations in the rate of ocean uptake of anthropogenic carbon},

author = {T Gorgues and O Aumont and K B Rodgers},

url = {http://www.biogeosciences.net/7/2581/2010/},

doi = {10.5194/bg-7-2581-2010},

issn = {1726-4189},

year  = {2010},

date = {2010-01-01},

urldate = {2010-01-01},

journal = {Biogeosciences},

volume = {7},

number = {8},

pages = {2581--2589},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Saba2010,

title = {Challenges of modeling depth-integrated marine primary productivity over multiple decades: A case study at BATS and HOT},

author = {Vincent S Saba and Marjorie {AM} Friedrichs and Mary-Elena Carr and David Antoine and Robert A Armstrong and Ichio Asanuma and Olivier Aumont and Nicholas R Bates and Michael J Behrenfeld and Val Bennington},

url = {http://onlinelibrary.wiley.com/doi/10.1029/2009GB003655/full},

year  = {2010},

date = {2010-01-01},

urldate = {2010-01-01},

journal = {Global Biogeochemical Cycles},

volume = {24},

number = {3},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Albert2010,

title = {Impact of nearshore wind stress curl on coastal circulation and primary productivity in the Peru upwelling system},

author = {A Albert and V Echevin and M L\'{e}vy and O Aumont},

url = {http://www.locean-ipsl.upmc.fr/~marina/PUBLI/albert_jgr_2010.pdf},

year  = {2010},

date = {2010-01-01},

urldate = {2010-01-01},

journal = {J. Geophys. Res},

volume = {115},

pages = {C12033},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tagliabue2010,

title = {Hydrothermal contribution to the oceanic dissolved iron inventory},

author = {A Tagliabue and L Bopp and J -C Dutay and A R Bowie and F Chever and P Jean-Baptiste and E Bucciarelli and D Lannuzel and G Sarthou and O Aumont and M Gehlen and C Jeandel},

doi = {10.1038/ngeo818},

year  = {2010},

date = {2010-01-01},

urldate = {2010-01-01},

journal = {Nature Geoscience},

volume = {3},

pages = {252--256},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Rodgers2009,

title = {Using altimetry to help explain patchy changes in hydrographic carbon measurements},

author = {Keith B Rodgers and Robert M Key and Anand Gnanadesikan and Jorge L Sarmiento and Olivier Aumont and Laurent Bopp and Scott C Doney and John P Dunne and David M Glover and Akio Ishida and Masao Ishii and Andrew R Jacobson and Claire Lo Monaco and Ernst Maier-Reimer and Herl\'{e} Mercier and Nicolas Metzl and Fiz F P\'{e}rez and Aida F Rios and Rik Wanninkhof and Patrick Wetzel and Christopher D Winn and Yasuhiro Yamanaka},

url = {http://onlinelibrary.wiley.com/doi/10.1029/2008JC005183/abstract},

doi = {10.1029/2008JC005183},

issn = {2156-2202},

year  = {2009},

date = {2009-09-01},

urldate = {2009-09-01},

journal = {Journal of Geophysical Research: Oceans},

volume = {114},

number = {C9},

pages = {C09013},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{tagliabue_influence_2009,

title = {Influence of light and temperature on the marine iron cycle: From theoretical to global modeling},

author = {Alessandro Tagliabue and Laurent Bopp and Olivier Aumont and Kevin R Arrigo},

url = {http://doi.wiley.com/10.1029/2008GB003214},

doi = {10.1029/2008GB003214},

issn = {08866236},

year  = {2009},

date = {2009-06-01},

urldate = {2017-10-09},

journal = {Global Biogeochemical Cycles},

volume = {23},

number = {2},

pages = {n/a--n/a},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{tagliabue_evaluating_2009,

title = {Evaluating the importance of atmospheric and sedimentary iron sources to Southern Ocean biogeochemistry},

author = {Alessandro Tagliabue and Laurent Bopp and Olivier Aumont},

url = {http://doi.wiley.com/10.1029/2009GL038914},

doi = {10.1029/2009GL038914},

issn = {0094-8276},

year  = {2009},

date = {2009-01-01},

urldate = {2017-02-09},

journal = {Geophysical Research Letters},

volume = {36},

number = {13},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{lenton_stratospheric_2009,

title = {Stratospheric ozone depletion reduces ocean carbon uptake and enhances ocean acidification},

author = {Andrew Lenton and Francis Codron and Laurent Bopp and Nicolas Metzl and Patricia Cadule and Alessandro Tagliabue and Julien Le Sommer},

url = {http://doi.wiley.com/10.1029/2009GL038227},

doi = {10.1029/2009GL038227},

issn = {0094-8276},

year  = {2009},

date = {2009-01-01},

urldate = {2014-02-07},

journal = {Geophysical Research Letters},

volume = {36},

number = {12},

keywords = {},

pubstate = {published},

tppubtype = {article}

}